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medRxivDeep intronic variantDiagnostic yield

Stratified evaluation of blood RNA sequencing in a rare disease cohort

Duzenli T, Durmus S, Kaya HE et al.medRxiv 2026 · May 2026
Relevance score
8/10
Disease / domain
Rare diseases / diagnostic odyssey (blood RNA-seq pipeline)
Source
medRxiv
DOI 10.64898/2026.05.27.26353804
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Variant / mechanism

Whole blood RNA-seq, stratification by VUS splicing type, 32.9% diagnostic yield

Summary

This study evaluates whole blood RNA-seq in 90 patients with suspected Mendelian disease after non-diagnostic exome sequencing, stratifying them into 3 groups: splicing VUS identified, pre-diagnosis available, and no diagnosis. Overall diagnostic yield reaches 32.9%, with superior performance in the splicing VUS group (50%). Deep intronic variants, pseudo-exons, and somatic mosaic events are detected in DNA-only-unresolved cases, confirming the added value of the transcriptomic approach in the diagnostic odyssey.

Synthesis written by Geno'X. For the full original abstract, please refer to the source publication.

Analysis

Patient stratification before RNA-seq is the key contribution: it optimizes resource use and identifies which subgroups benefit most. A 50% yield in patients with splicing VUS is a strong argument for RNA-seq implementation in laboratories handling neuromuscular diseases and mitochondrial dysfunction.

Why this score?

Clinical impact: 3/3 · Evidence strength: 3/3 · Novelty: 1/2 · Sample size: 1/1 · Publication status: 0/1 → Total: 8/10

Keywords

RNA-seqdiagnostic yieldrare diseasesVUSdeep intronic
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