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ZFXHGNC OMIM 301118 XL de novo (♀)PubMedPhenotypic expansionRecurrent variant

De Novo Heterozygous ZFX Frameshift Variant in a Female With an X-Linked Neurodevelopmental Disorder

Showpnil IA, Daley A, Sites ER, et al.American Journal of Medical Genetics A, 2026 Feb;200(2):521-530 · Invalid Date
Relevance score
7/10
Disease / domain
X-linked NDD (ZFX syndrome) — female presentation
Source
PubMed
PMID 41074764
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Variant / mechanism

ZFX (p.Met666Valfs*2, de novo, heterozygous — previously described in a male)

De novo frameshift — haploinsufficiency + transcriptomic analysis (15 target genes identified)

Summary

Report of a 20-year-old woman carrying a heterozygous ZFX frameshift variant p.(Met666Valfs2) identified by WGS (previously reported in a male). Phenotype: psychomotor delay, hypotonia, cardiac abnormalities, ASD, mild intellectual disability, absence seizures, sensorineural hearing loss, hyperpigmentation, ophthalmoplegia. Novel manifestations: hypoplasia of the inferior cerebellar vermis, arterial hypoplasia, long palpebral fissures. RNA-seq identifies 15 neurodevelopmental ZFX* target genes.

Synthesis written by Geno'X. For the full original abstract, please refer to the source publication.

Analysis

Highly variable expressivity among female carriers. This case documents a truncating variant in a woman with an expanded clinical spectrum (cerebellar, vascular, endocrine). To be integrated into genetic counselling and surveillance of female ZFX variant carriers.

Why this score?

female-manifestation expansion +1; de novo +2; functional RNA-seq analysis +2; 1 case +0; phenotypic expansion +1; journal +1

Keywords

ZFXXL-NDDautismdevelopmental delayWGS
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