Full archive

170 articles across 22 weeks of watch.

Week of 29 September 2026
7 articles
SNP calling from nanopore transcriptome sequencing data
View week
Week of 22 September 2026
9 articles
Cardiomyopathies — large variant detection on gene panels
View week
Week of 15 September 2026
11 articles
Rare disease undiagnosed after genome sequencing
View week
Week of 8 September 2026
6 articles
Balanced structural variation of the human genome
View week
Week of 1 September 2026
8 articles
Missense variant interpretation — inborn errors of immunity
View week
Week of 25 August 2026
8 articles
COL4A3/A4/A5 - Alport spectrum (hereditary glomerular basement membrane disorders)
View week
Week of 18 August 2026
6 articles
Cancer detection from cell-free DNA (liquid biopsy)
View week
Week of 11 August 2026
10 articles
Personal genomics and diploid reference
View week
Week of 4 August 2026
5 articles
Developmental and epileptic encephalopathy in adults
View week
Week of 28 July 2026
6 articles
KCNQ1 - Congenital long QT syndrome
View week
Week of 21 July 2026
3 articles
Automated variant interpretation (ACMG classification)
View week
Week of 14 July 2026
7 articles
B cell non-Hodgkin lymphoma
View week
Week of 7 July 2026
11 articles
Variant interpretation — monogenic epilepsy
View week
Week of 30 June 2026
6 articles
Automated genetic variant classification by LLM following ACMG/AMP/ClinGen
View week
Week of 23 June 2026
9 articles
Unified structural variant (SV) detection in short-read WGS
View week
Week of 16 June 2026
13 articles
Clinical AI / LLMs in medicine
View week
Week of 10 June 2026
16 articles
Proteogenomic annotation
View week
Week of 3 June 2026
6 articles
Variant classification — impact of ClinGen VCEP criteria specifications on diagnostic interpretation
View week
Week of 27 May 2026
5 articles
Noncoding variant interpretation / transcriptional regulation
View week
Week of 20 May 2026
3 articles
Splicing variants (deep intronic)
View week
Week of 13 May 2026
4 articles
Benchmark of STR and homopolymer detection in clinical sequencing — real mutation rates in a four-generation pedigree
View week
Week of 6 May 2026
11 articles
Rare diseases — diagnosis by agentic AI system
View week

Search the full archive

Gene, disease, OMIM, keyword - across all published weeks.

170 articles of 170
Variant interpretation
PubMed
★ Top pick

Bayesian Integration of Tumor Mutational Signatures and Somatic Features Refines Pathogenicity Assessment of Germline Mismatch Repair Variants.

Lynch syndrome — germline variant classification
10
Variant interpretationPathogenicity predictionClinical pipeline
Hum Mutat 2026· SepRead
SeizeVar
PubMed
★ Top pick

From Pathogenicity to Mechanism: A Variant Interpretation Framework for Monogenic Epilepsy.

Variant interpretation — monogenic epilepsy
10
Pathogenicity predictionPathogenicity predictionNew tool
Clin Genet 2026· JulRead
Long-read
PubMed
★ Top pick

Targeted long-read sequencing with adaptive sampling enables the integrated genomic and epigenomic profiling of imprinting disorders.

Imprinting disorder diagnostics (Beckwith-Wiedemann spectrum)
10
Long-readLong-read sequencingClinical pipeline
Sci Rep 2026· JulRead
Long-read
PubMed
★ Top pick

Targeted long-read sequencing enables comprehensive analysis of the genetic and epigenetic landscape of inherited myopathies.

Inherited myopathy diagnostics (including FSHD/D4Z4)
10
Long-readLong-read sequencingClinical pipeline
Nat Commun 2026· JulRead
AI-CURA
PubMed
★ Top pick
⭐ À la une

AI-CURA, an automated LLM workflow for high-accuracy genetic variant classification

Automated genetic variant classification by LLM following ACMG/AMP/ClinGen
10
Pathogenicity predictionLLM appliedNew tool
Sci Transl Med 2026· JunRead
Long-read
PubMed
★ Top pick

Systematic evaluation of long-read and short-read sequencing in neurological disorders diagnosis: a direct comparison study of 310 patients

Genetic neurological disorders — direct comparison of long-read vs short-read WGS
10
Long-readLong-read sequencingBenchmark
NPJ Genom Med 2026· JunRead
Long-read
PubMed
★ Top pick

Rapid and Reproducible Karyotyping with Long Read Sequencing in AML Patients

Acute myeloid leukemia — rapid karyotyping by long-read sequencing
10
Long-readLong-read sequencingClinical pipeline
Blood Adv 2026· JunRead
Structural variants
PubMed
★ Top pick

GrassSV - hybrid method to detect structural variants in high throughput DNA-seq data

Unified structural variant (SV) detection in short-read WGS
10
Structural variantsSV callerBenchmark
PLoS Comput Biol 2026· JunRead
Splicing prediction — detection of deep-intronic pathogenic variants
PubMed
★ Top pick

SpliceSelectNet: a hierarchical Transformer-based deep learning model for splice site prediction

Splicing prediction — detection of deep-intronic pathogenic variants
10
Pathogenicity predictionNew tool
Nucleic Acids Res 2026· JunRead
Algorithm benchmark
PubMed
★ Top pick

pAnno: a comprehensive, precise, and fast proteogenomic workflow for the discovery of novel coding regions.

Proteogenomic annotation
10
Algorithm benchmarkNew toolClinical pipeline
Genome Biol 2026· JunRead
Language model / AI
PubMed
★ Top pick

From raw audio to structure: an agent-based pipeline that boosts medical LLM performance.

Clinical medical AI
10
Language model / AILLM appliedClinical pipeline
NPJ Digit Med 2026· JunRead
Structural variants
PubMed
★ Top pick

Pangenomes aid accurate detection of large insertions and deletions from targeted sequencing: the case of cardiomyopathies.

Cardiomyopathies — large variant detection on gene panels
9
Structural variantsSV callerBenchmark
Genome Med 2026· AugRead
Variant interpretation
PubMed
★ Top pick
⭐ À la une

Proteomics identify disease-associated variants in patients with rare diseases undiagnosed after genome sequencing.

Rare disease undiagnosed after genome sequencing
9
Variant interpretationClinical pipeline
Sci Transl Med 2026· SepRead
Pathogenicity prediction
PubMed
★ Top pick

Prediction of human missense variant effects from functional evidence.

Missense variant interpretation — inborn errors of immunity
9
Pathogenicity predictionNew toolPathogenicity prediction
Nat Genet 2026· AugRead
Pathogenicity prediction
PubMed
★ Top pick

P-KNN: joint calibration of multiple pathogenicity prediction tools streamlines variant classification.

Variant classification — Mendelian disease
9
Pathogenicity predictionNew toolPathogenicity prediction
Genet Med 2026· AugRead
COL4A3/A4/A5
PubMed
★ Top pick

Kidney Transcriptome Sequencing Improves Molecular Diagnosis and Reveals Splicing Complexity Across the Alport Spectrum.

Alport spectrum (hereditary glomerular basement membrane disorders)
9
Clinical pipelineClinical pipeline
Kidney Int Rep 2026· AugRead
Long-read
PubMed
★ Top pick

An Icelandic pangenome reference.

Early-onset Parkinson disease and homocystinuria (variants located in low-mappability regions)
9
Long-readNew toolLong-read sequencing
Nature 2026· AugRead
Algorithm benchmark
PubMed
★ Top pick
⭐ À la une

A complete diploid human genome benchmark for personalized genomics.

Personal genomics and diploid reference
9
Algorithm benchmarkBenchmark
Cell 2026· AugRead
KCNQ1
PubMed
★ Top pick

Classification models for KCNQ1 variants distinguish functional and trafficking effects to enhance pathogenicity interpretation.

Congenital long QT syndrome
9
Pathogenicity predictionNew toolPathogenicity prediction
Proc Natl Acad Sci U S A 2026· JulRead
B cell non-Hodgkin lymphoma
PubMed
★ Top pick

Self-explaining artificial intelligence for the classification of B cell non-Hodgkin lymphoma: A diagnostic decision support study.

B cell non-Hodgkin lymphoma
9
New toolBenchmark
PLoS Med 2026· JulRead
Structural variants
PubMed
★ Top pick

Copy number variant analysis by exome sequencing is an effective approach to optimize diagnostic yield for developmental disorders-the DDD-Africa study.

Developmental disorders
9
Structural variantsClinical pipelineSV caller
Eur J Hum Genet 2026· JulRead
ClairS
PubMed
★ Top pick

ClairS: a deep-learning method for long-read tumor-normal pair somatic small variant calling.

Somatic variant calling (tumor-normal pairs, long-read)
9
Long-readNew toolLong-read sequencing
Nat Methods 2026· JulRead
KGRD
PubMed
★ Top pick

KGRD: a knowledge-graph-augmented automated reasoning framework for diagnosis and counselling of paediatric rare genetic disorders.

Diagnostic support for paediatric rare diseases
9
Language model / AILLM appliedNew tool
NPJ Digit Med 2026· JulRead
RankVar
PubMed
★ Top pick

RankVar: machine learning-based variant ranking and reinterpretation for rare genetic diseases.

Variant prioritisation — rare genetic diseases
9
Clinical pipelineNew toolPathogenicity prediction
Genome Med 2026· JulRead
Clinical pipeline
PubMed
★ Top pick

Validation of an integrated metagenomic pipeline combining optimized wet-lab processing and tiered reporting for CSF pathogen detection

Central nervous system infections — CSF pathogen detection by metagenomics
9
Clinical pipelineClinical pipelineBenchmark
Microbiol Spectr 2026· JunRead
Clinical pipeline
PubMed
★ Top pick

MAJIQ-CLIN: A novel tool to help identify Mendelian disease-causing variants from RNA-Seq data

Undiagnosed Mendelian diseases — RNA-Seq analysis
9
Clinical pipelineNew toolClinical pipeline
Genet Med 2026· JunRead
Clinical pipeline
PubMed
★ Top pick

Clinical Utility of Exome Sequencing: Post-Exome Testing Decision Changes in the Management of Children with Suspected Rare Genetic Disease

Rare pediatric genetic diseases — clinical utility of exome sequencing
9
Clinical pipelineClinical pipelineBenchmark
Genet Med 2026· JunRead
Pathogenicity prediction
PubMed
★ Top pick

Functional effect predictions for ion channel missense variants using a protein language model

Channelopathies — functional classification of missense variants
9
Pathogenicity predictionPathogenicity predictionNew tool
J Hum Genet 2026· JunRead
Variant interpretation
PubMed
★ Top pick

Tackling non-canonical splicing in arrhythmogenic cardiomyopathy to reduce the uncertain significance variants burden

Arrhythmogenic cardiomyopathy — non-canonical splicing variants and VUS
9
Variant interpretationPathogenicity predictionClinical pipeline
J Transl Med 2026· JunRead
Pathogenicity prediction
bioRxiv
★ Top pick

A fine-tuned genomic language model captures nucleotide-level information overlooked by missense variant impact predictors.

Missense variant interpretation / pathogenicity prediction
9
Pathogenicity predictionNew toolPathogenicity prediction
bioRxiv 2026· JunRead
Algorithm benchmark
PubMed
★ Top pick

Benchmarking Q40 sequencing for sensitive and efficient detection of rare genomic variants.

Rare variant detection / sequencing quality
9
Algorithm benchmarkBenchmarkClinical pipeline
Genome Biol 2026· JunRead
Epigenomic annotation / noncoding variant interpretation
PubMed
★ Top pick

Pan-cell type continuous chromatin state annotation of all epigenomes from the International Human Epigenome Consortium.

Epigenomic annotation / noncoding variant interpretation
9
New toolPathogenicity prediction
Genome Biol 2026· JunRead
Clinical pipeline
PubMed
★ Top pick

MAJIQ-CLIN: A novel tool to help identify Mendelian disease-causing variants from RNA-Seq data.

Mendelian diseases / splicing variants missed by ES/GS
9
Clinical pipelineNew toolClinical pipeline
Genet Med 2026· JunRead
Long-read
PubMed
★ Top pick

HiFi sequencing accurately identifies clinically relevant variants in paralogous genes.

Variants in paralogous genes
9
Long-readLong-read sequencingClinical pipeline
Am J Hum Genet 2026· JunRead
Language model / AI
PubMed
★ Top pick

MARRVEL-MCP: An agentic interface for Mendelian disease discovery via tool-augmented context engineering.

Mendelian diseases — variant interpretation
9
Language model / AILLM appliedClinical pipeline
Am J Hum Genet 2026· JunRead
Clinical pipeline
PubMed
★ Top pick

G.AI: an AI-driven platform for phenotype standardization, variant interpretation and structured clinical reporting in rare disease genomic diagnosis.

Rare diseases — genomic diagnosis
9
Clinical pipelineLLM appliedClinical pipeline
J Transl Med 2026· JunRead
Variant interpretation
PubMed
★ Top pick

Targeted reflex RNA sequencing for enhanced variant classification on exome and genome sequencing improves patient outcomes.

Splicing variants — reclassification by RNA-seq
9
Variant interpretationClinical pipelinePathogenicity prediction
NPJ Genomic Med 2026· JunRead
Clinical pipeline
PubMed
★ Top pick

The genetic etiology of spontaneous abortion: insights from chromosomal microarray analysis and whole-exome sequencing.

Spontaneous abortion — genetic etiology
9
Clinical pipelineClinical pipelineBenchmark
Sci Rep 2026· JunRead
Language model / AI
PubMed
★ Top pick

Benchmarking reveals the superiority of nucleic acid foundation models in predicting lncRNA coding potential.

lncRNA coding potential prediction
9
Language model / AIBenchmarkPathogenicity prediction
Genome Biol 2026· JunRead
Variant interpretation
PubMed
★ Top pick

Evaluating the Impact of ClinGen Variant Curation Expert Panel Criteria Specifications on Variant Interpretation across Multiple Genes.

Variant classification — impact of ClinGen VCEP criteria specifications on diagnostic interpretation
9
Variant interpretationBenchmarkPathogenicity prediction
J Mol Diagn 2026· JunRead
Benchmark of STR and homopolymer detection in clinical sequencing — real mutation rates in a four-generation pedigree
PubMed
★ Top pick

AVITI sequencing of a four-generation CEPH/Utah pedigree confirms low mutation rates at homopolymers and short tandem repeats.

Benchmark of STR and homopolymer detection in clinical sequencing — real mutation rates in a four-generation pedigree
9
BenchmarkClinical pipeline
Genome Biol 2026· MayRead
Rare diseases — diagnosis by agentic AI system
PubMed
★ Top pick
⭐ À la une

An agentic system for rare disease diagnosis with traceable reasoning

Rare diseases — diagnosis by agentic AI system
9
LLM appliedClinical pipeline
Nature, 2026· MarRead
Language model / AI
PubMed
★ Top pick

Advancing regulatory variant effect prediction with AlphaGenome

Regulatory variants — functional effect prediction on chromatin, splicing and expression
9
Language model / AIPathogenicity predictionNew tool
Nature, 2026· JanRead
Missense variants — phenotype-specific pathogenicity prediction
PubMed
★ Top pick

Phenotypic prediction of missense variants via deep contrastive learning

Missense variants — phenotype-specific pathogenicity prediction
9
Pathogenicity predictionNew tool
Nature Biomedical Engineering, 2026· AprRead
Long-read
PubMed
★ Top pick

HiFi long-read RNA sequencing enhances clinical diagnostics in rare disorders

Rare diseases with suspected splicing variants — LRS vs SRS differential diagnostic yield
9
Long-readLong-read sequencingDiagnostic RNA-seq
European Journal of Human Genetics, 2026· MarRead
Structural variants
PubMed

dicast: a machine learning method for accurate structural variant detection from short-read sequencing data.

Structural variant detection from short-read sequencing
8
Structural variantsSV callerNew tool
Genome Biol 2026· SepRead
Pathogenicity prediction
PubMed

Predicting genome-wide functional constraints with GPN-Star.

Variant interpretation — genome-wide prediction
8
Pathogenicity predictionNew toolPathogenicity prediction
Nature 2026· SepRead
Polygenic risk score
PubMed

SPLENDID incorporates continuous genetic ancestry in biobank-scale data to improve polygenic risk prediction across diverse populations.

Polygenic risk prediction across diverse populations
8
Polygenic risk scoreNew toolBenchmark
Nat Methods 2026· SepRead
Long-read
PubMed

Resolving missing human polymorphic inversions and other complex variants from ultra-long read data

Balanced structural variation of the human genome
8
Long-readNew toolLong-read sequencing
Genome Res 2026· SepRead
Variant interpretation
PubMed

Equity in genome sequencing for rare disease diagnosis: a cross-sectional analysis of data from the UK 100,000 Genomes Project.

Variant prioritisation and ancestry equity — rare disease diagnosis
8
Variant interpretationClinical pipelineBenchmark
EBioMedicine 2026· AugRead
Long-read
medRxiv

A high-resolution human pangenome structural variant resource for improved disease association

Structural variants — unsolved rare disease
8
Long-readSV callerLong-read sequencing
medRxiv 2026· AugRead
Variant interpretation
PubMed

AAVC: an automated framework for high-accuracy ACMG-based variant classification.

Automated variant interpretation (ACMG classification)
8
Variant interpretationNew toolPathogenicity prediction
Genet Med 2026· JulRead
asms
PubMed

asms: finding allele-specific methylation in human genomes without phasing.

Allele-specific methylation detection
8
Long-readNew toolLong-read sequencing
NAR Genom Bioinform 2026· JulRead
EviAnn
PubMed

Efficient evidence-based genome annotation with EviAnn.

Evidence-based genome annotation
8
Algorithm benchmarkNew toolBenchmark
Nat Methods 2026· JulRead
TP53
PubMed

A zero-parameter first-principles gate framework for full-length TP53 missense variant interpretation

Classification of TP53 missense variants — first-principles approach
8
Pathogenicity predictionPathogenicity predictionNew tool
PLoS Comput Biol 2026· JunRead
GPC3
PubMed

A trio-based long-read sequencing workflow identifies a pathogenic transposable element insertion in a previously undiagnosed patient

Undiagnosed genetic disease — transposable element insertion detected by trio long-read sequencing
8
Long-readLong-read sequencingSV caller
J Hum Genet 2026· JunRead
AIFM1
X-linkedPubMed

Nanopore-based haplotype-resolved X-chromosome inactivation analysis for clinical severity assessment in X-linked disorders: an AIFM1 family study with proof-of-concept application to a mosaic PDHA1 carrier

X-linked disorders — X-chromosome inactivation analysis by Nanopore sequencing
8
Long-readLong-read sequencingClinical pipeline
HGG Adv 2026· JunRead
Transcriptomics pipelines / diagnostic RNA-seq
bioRxiv

STAR Suite: Transcriptomics processing in a single binary through AI-assisted development.

Transcriptomics pipelines / diagnostic RNA-seq
8
New toolClinical pipeline
bioRxiv 2026· JunRead
Long-read
bioRxiv

SWARM resolves nanopore signal interference between RNA modification types and reveals splicing-shaped pseudouridylation.

Epitranscriptomic modifications / direct RNA nanopore sequencing
8
Long-readNew toolLong-read sequencing
bioRxiv 2026· JunRead
Language model / AI
PubMed

Evaluating the role of pretraining dataset size and diversity on single-cell foundation model performance.

Single-cell foundation models / transcriptomics
8
Language model / AINew toolBenchmark
Nat Methods 2026· JunRead
Language model / AI
PubMed

Towards robust foundation models for digital pathology.

Digital pathology / foundation model robustness
8
Language model / AINew toolBenchmark
Nat Commun 2026· JunRead
SRY
PubMed

Combined optical genome mapping and CNV-seq identify complex Y-chromosome rearrangements and ectopy in 46,XX testicular disorder of sex development.

46,XX testicular disorder of sex development / complex Y-chromosome rearrangements
8
Structural variantsNew toolSV caller
Mol Cytogenet 2026· JunRead
G6PD
PubMed

Evidence for G6PD variant classification from multiplexed functional assays.

G6PD deficiency
8
Algorithm benchmarkBenchmarkPathogenicity prediction
Genome Biol 2026· JunRead
ABCA7
PubMed

GWAS on short tandem repeats identifies genetic mechanisms in Alzheimer's disease.

Alzheimer's disease
8
BenchmarkSV caller
Nat Commun 2026· JunRead
Long-read
bioRxiv

SWARM resolves nanopore signal interference between RNA modification types and reveals splicing-shaped pseudouridylation.

Epitranscriptome — RNA modifications
8
Long-readLong-read sequencingNew tool
bioRxiv 2026· JunRead
Long-read
PubMed

Hybrid untargeted short-read and targeted long-read RNA sequencing facilitates genotype-phenotype associations at single-cell resolution.

Hybrid short-read/long-read RNA-seq pipeline — genotype-phenotype associations at single-cell resolution
8
Long-readLong-read sequencingNew tool
Genome Biol 2026· JunRead
Autosomal dominant Alzheimer's disease (PSEN1/PSEN2/APP) — genetic modifiers
Autosomal dominantPubMed

Identification of genetic modifiers of autosomal dominant Alzheimer's disease: a genome-wide association study.

Autosomal dominant Alzheimer's disease (PSEN1/PSEN2/APP) — genetic modifiers
8
Benchmark
Lancet Neurol 2026· JunRead
Language model / AI
PubMed

Decoding sequence determinants of gene expression in diverse cellular and disease states.

Noncoding variant interpretation / transcriptional regulation
8
Language model / AIPathogenicity predictionNew tool
Nat Methods 2026· MayRead
Structural variants
PubMed

Microhomology-mediated tandem duplication is a conserved mechanism of genomic variation with relevance to human disease.

Microhomology-mediated tandem duplication mechanism — clinical relevance for pathogenic CNVs
8
Structural variantsSV callerNew tool
PNAS 2026· MayRead
Structural variants
PubMed

Integrative approach for delineating structural variants using optical genome mapping and short-read sequencing.

Structural variants (SV) in diagnostic genetics — integrative OGM + short-read approach
8
Structural variantsSV callerClinical pipeline
Mol Biol Rep 2026· MayRead
Long-read
PubMed

Population-level structural variant characterization using pangenome graphs

Structural variants (SV) — population-level catalog via pangenome
8
Long-readSV caller
Nature Genetics, 2026· MarRead
Rare pediatric genetic diseases — undiagnosed after WES/short-read WGS
PubMed

Diagnostic utility of clinical genome reanalysis in rare pediatric disorders using long-read sequencing

Rare pediatric genetic diseases — undiagnosed after WES/short-read WGS
8
Long-read sequencingGenomic reanalysis
HGG Advances, 2026· AprRead
Clinical pipeline
PubMed

Scaling genomic reanalysis to unlock diagnoses and transform rare disease care

Rare genetic diseases — optimization of diagnostic yield through systematic reanalysis
8
Clinical pipelineGenomic reanalysisDiagnostic yield
HGG Advances, 2026· AprRead
Long-read
PubMed

Targeted long-read RNA sequencing for rare disease diagnosis and variant interpretation

Rare genetic diseases — variant interpretation by targeted long-read RNA-seq
8
Long-readLong-read sequencingDiagnostic RNA-seq
Science Advances, 2026· AprRead
Clinical pipeline
medRxiv

Early identification of rare disease using deep phenotyping of electronic health records

Rare disease — early identification from electronic health records
7
Clinical pipelineClinical pipeline
medRxiv 2026· SepRead
Long-read
medRxiv

Yield of Long-Read Genome Sequencing for Rare Disease Diagnosis in Short-Read Genome Negative Cases

Mendelian conditions — long-read genome diagnosis
7
Long-readLong-read sequencingClinical pipeline
medRxiv 2026· SepRead
Variant interpretation
medRxiv

Empirically calibrated allele frequency thresholds for ACMG BA1, BS1 and PM2 evidence criteria

Variant classification — ACMG allele frequency criteria
7
Variant interpretationPathogenicity predictionClinical pipeline
medRxiv 2026· SepRead
Autism spectrum disorder
De novoPubMed

De novo structural variants in autism spectrum disorder disrupt distal regulatory interactions of neuronal genes

Autism spectrum disorder
7
New toolPathogenicity prediction
Genome Res 2026· AugRead
Long-read
PubMed

Hunting for microsatellite instability in long-read data with Owl

Microsatellite instability and mismatch repair deficiency
7
Long-readNew toolLong-read sequencing
PLoS Comput Biol 2026· SepRead
Long-read
PubMed

Optimized Cas9-Enriched Nanopore Sequencing and Analysis Workflow for Clinical Diagnosis of Repeat Expansion Disorders.

Cerebellar ataxia — repeat expansion disorders
7
Long-readLong-read sequencingNew tool
Adv Sci (Weinh) 2026· AugRead
Long-read
PubMed

Long-read transcriptome analysis using IsoRanker for identifying pathogenic variants in Mendelian conditions.

Non-coding variants — unsolved Mendelian conditions
7
Long-readLong-read sequencingNew tool
Am J Hum Genet 2026· AugRead
BIN1
PubMed

AGG repeat expansion and aggregation of BIN1 in multiple system atrophy.

Multiple system atrophy
7
Long-readLong-read sequencing
Brain 2026· AugRead
Language model / AI
PubMed

Interpretable distillation reveals that deep learning splicing models suffer from pervasive confounders and blind spots.

Not disease-specific (interpretation of splicing variants)
7
Language model / AIPathogenicity predictionBenchmark
Genome Biol 2026· AugRead
Long-read
PubMed

TandemTwister: scalable genotyping and advanced visualization of tandem repeats.

Tandem repeat disorders (neurodegenerative and neurodevelopmental disorders)
7
Long-readNew toolBenchmark
NAR Genom Bioinform 2026· AugRead
Clinical pipeline
PubMed

Scaling up Genomics: A Mainstream Model of Care in Nephrology.

Genetic kidney disease
7
Clinical pipelineClinical pipeline
Clin J Am Soc Nephrol 2026· AugRead
Rare autosomal trisomies detected prenatally
PubMed

Rare Autosomal Trisomies Detected by Noninvasive Prenatal Testing: Performance, Outcomes, and Exploratory Analysis of the Theoretical Mosaicism Ratio.

Rare autosomal trisomies detected prenatally
7
Prenat Diagn 2026· AugRead
Language model / AI
PubMed

Generalizable cancer detection from ultra-low-pass WGS via deep contextual modeling of cfDNA sequences.

Cancer detection from cell-free DNA (liquid biopsy)
7
Language model / AINew toolBenchmark
Mol Biomed 2026· AugRead
Polygenic risk score
Journal

Improving the reliability of polygenic risk score-based prediction for cardiovascular and renal complications across ancestries in type 2 diabetes using Mondrian Cross-Conformal Prediction

Type 2 diabetes — cardiovascular and renal complications
7
Polygenic risk scoreNew toolBenchmark
PLOS Comput Bio 2026· AugRead
Complex traits — gene-level association mapping
Journal

IBAS: Interaction-bridged association studies discovering novel genes underlying complex traits

Complex traits — gene-level association mapping
7
New toolBenchmark
PLOS Comput Bio 2026· AugRead
RNUopathies and variant classification in snRNA genes
medRxiv

Guidance for clinical variant classification in genes for spliceosomal small nuclear RNAs.

RNUopathies and variant classification in snRNA genes
7
Clinical pipelineNew tool
medRxiv 2026· AugRead
Pathogenicity prediction
PubMed

SIMLINK Enables Accurate Variant Pathogenicity Prediction through Modeling the Gene-Variant-Feature Association Structure.

Pathogenicity prediction for missense and synonymous variants
7
Pathogenicity predictionNew toolPathogenicity prediction
Bioinformatics 2026· AugRead
JAG1
Autosomal dominantPubMed

Likelihood-based calibration improves the clinical utility of JAG1 functional data for variant classification.

Alagille syndrome
7
Variant interpretationPathogenicity prediction
Am J Hum Genet 2026· JulRead
Clinical pipeline
PubMed

Phenotype-guided etiologic workup in a prospective cohort of 144 adults with developmental and epileptic encephalopathy.

Developmental and epileptic encephalopathy in adults
7
Clinical pipelineClinical pipeline
Epilepsia Open 2026· AugRead
Pathogenicity prediction
bioRxiv

A Reproducible MFASS Benchmark of Splice-Disruption Predictors Reveals a Shared Exon-Interior Blind Spot

Prediction of variant effects on splicing
7
Pathogenicity predictionBenchmarkPathogenicity prediction
bioRxiv 2026· JulRead
Long-read
PubMed

A De Novo Algorithm for Allele Reconstruction from Oxford Nanopore Amplicon Reads, with Application to CYP2D6.

Allele reconstruction and diplotyping from long-read amplicon data
7
Long-readNew toolLong-read sequencing
Bioinformatics 2026· JulRead
MYBPC3
PubMed

Scaled Multidimensional Assays of Variant Effect Identify Sequence-Function Relationships in Hypertrophic Cardiomyopathy.

Hypertrophic cardiomyopathy
7
Long-readPathogenicity predictionLong-read sequencing
Circulation 2026· JulRead
Pathogenicity prediction
bioRxiv

Coordinate- and Sequence-Based Features for a new Combined Annotation-Dependent Depletion Framework of Structural Variants (CADD-SV v2.0)

Structural variant interpretation
7
Pathogenicity predictionNew toolPathogenicity prediction
bioRxiv 2026· JulRead
Long-read
PubMed

A systematic benchmark of bioinformatics methods for single-cell and spatial RNA-seq nanopore long reads data.

Single-cell and spatial transcriptomics
7
Long-readBenchmarkLong-read sequencing
NAR Genom Bioinform 2026· JulRead
Long-read
bioRxiv

synpact: accurate, memory-light PacBio HiFi read mapping via a hierarchy of locally-consistent syncmer blocks

Long-read read mapping
7
Long-readNew toolLong-read sequencing
bioRxiv 2026· JulRead
Structural variants
PubMed

A blended genome and exome sequencing method captures genetic variation in an unbiased and cost-effective manner.

Genomic sequencing — equitable access
7
Structural variantsNew toolClinical pipeline
Nat Genet 2026· JulRead
Svirlpool
bioRxiv

Svirlpool: structural variant detection from long read sequencing by local assembly.

Structural variant detection (long-read, multi-sample)
7
Long-readSV callerLong-read sequencing
bioRxiv 2026· JunRead
Long-read
PubMed

Epigenetic Liquid Biopsy Enables Universal Mutation-Agnostic Molecular Surveillance for High-Risk Neuroblastoma.

Molecular surveillance of high-risk neuroblastoma
7
Long-readClinical pipeline
Clin Cancer Res 2026· JulRead
Long-read
PubMed

Near-perfect genome sequencing in medical genetics

Medical genetics — toward near-perfect genome sequencing (one-test paradigm)
7
Long-readLong-read sequencingClinical pipeline
Nat Genet 2026· JunRead
Algorithm benchmark
PubMed

Comprehensive comparison of homologous recombination deficiency predictors in early-stage triple-negative breast cancer

Triple-negative breast cancer — comparison of homologous recombination deficiency (HRD) predictors
7
Algorithm benchmarkBenchmarkPathogenicity prediction
Breast Cancer Res 2026· JunRead
Long-read
PubMed

Spatially resolved m6A profiling across tissues using m6A-ARTR-DBiT.

Spatial epitranscriptomics / m6A modification
7
Long-readNew toolLong-read sequencing
Nat Methods 2026· JunRead
Newborn screening / genomics
PubMed

Genomics to Enhance Newborn Screening?

Newborn screening / genomics
7
BenchmarkClinical pipeline
Genet Med 2026· JunRead
Language model / AI
PubMed
⭐ À la une

General-purpose large language models outperform specialized clinical AI tools on medical benchmarks.

Clinical AI / LLMs in medicine
7
Language model / AIBenchmarkLLM applied
Nat Med 2026· JunRead
Preimplantation genetic testing for monogenic disorders (PGT-M)
PubMed

Systematic assessment of allele dropout in preimplantation genetic testing for monogenic disorders: Incidence, detection, and clinical testing strategies.

Preimplantation genetic testing for monogenic disorders (PGT-M)
7
BenchmarkClinical pipeline
Fertil Steril 2026· JunRead
Gastric cancer — early detection
PubMed

Cell-free DNA methylation biomarkers for the early detection and tumor burden monitoring of gastric cancer.

Gastric cancer — early detection
7
Clinical pipelineBenchmark
NPJ Precis Oncol 2026· JunRead
Long-read
PubMed

Long-read sequencing bridges germline and somatic variant detection: a multi-modal approach for hereditary cancer diagnostics.

Hereditary cancer — multi-modal diagnosis
7
Long-readLong-read sequencingClinical pipeline
Clin Transl Oncol 2026· JunRead
Long-read
PubMed

Benchmarking next- versus third-generation sequencing in metagenomics: performance metrics and diagnostic efficacy.

Clinical diagnostic metagenomics
7
Long-readLong-read sequencingBenchmark
Microbiology Spectrum 2026· JunRead
Algorithm benchmark
PubMed

A scalable approach to investigating sequence-to-function predictions from personal genomes.

Sequence-to-function prediction on personal genomes
7
Algorithm benchmarkNew toolBenchmark
Nat Methods 2026· JunRead
Language model / AI
bioRxiv

OmniGene-4: A Unified Bio-Language MoE Model with Router-Level Interpretability.

Multimodal bio-language model
7
Language model / AILLM appliedNew tool
bioRxiv 2026· JunRead
Long-read
PubMed

Third-Generation Nanopore Sequencing for Post-Transplant Chimerism Monitoring.

Post-hematopoietic stem cell transplantation chimerism monitoring — third-generation Nanopore sequencing
7
Long-readLong-read sequencingClinical pipeline
HLA 2026· JunRead
Variant interpretation
bioRxiv

Vision-Based Genomic Model for Copy Number Variant Pathogenicity Prediction.

CNV pathogenicity prediction — deep learning model with image-based representation
7
Variant interpretationNew toolPathogenicity prediction
bioRxiv 2026· MayRead
Long-read
bioRxiv

Personalized reference genome-based pipeline reveals comprehensive haplotype-resolved views of cancer genomes.

Cancer genome analysis — pipeline based on personalized haplotype-resolved reference genome
7
Long-readNew toolLong-read sequencing
bioRxiv 2026· MayRead
Long-read
PubMed

StringTie3 improves total RNA-seq assembly by resolving nascent and mature transcripts.

Diagnostic RNA-seq assembly / splicing isoforms
7
Long-readLong-read sequencingClinical pipeline
Nat Methods 2026· MayRead
Language model / AI
PubMed

Advancing generative large language models toward discriminative performance in protein function prediction.

Protein function prediction / functional genomics
7
Language model / AILLM appliedNew tool
Genome Biol 2026· MayRead
Pathogenicity prediction
PubMed

Analyzing the performance of deep learning splice prediction algorithms.

Splicing variants (deep intronic)
7
Pathogenicity predictionBenchmarkPathogenicity prediction
PLoS ONE 2026· MayRead
Charcot-Marie-Tooth
PubMed

CGG repeat expansions in Charcot-Marie-Tooth disease: insights from the 100 000 Genomes Project.

Unsolved Charcot-Marie-Tooth disease
7
Charcot-Marie-ToothBenchmark
Journal of Neurology Neurosurgery and Psychiatry 2026· MayRead
Rare neurogenetic disorders in Moroccan families — exome diagnosis and expanded genetic spectrum
PubMed

Expanding the genetic spectrum of neurogenetic disorders in Moroccan families by exome sequencing.

Rare neurogenetic disorders in Moroccan families — exome diagnosis and expanded genetic spectrum
7
Clinical pipelineBenchmark
Mol Biol Rep 2026· MayRead
Variant interpretation
PubMed

Comprehensive evaluation of ACMG/AMP-based variant classification tools

Mendelian diseases — ACMG/AMP classification tool benchmark in real clinical context
7
Variant interpretationACMG classificationBenchmark
Bioinformatics (Oxford), 2026· FebRead
Variant interpretation
PubMed

Splicing Predictions, Splicing Assays, and Variant Classification Using ACMG/AMP Guidelines: Challenges Observed with BRCA1 and BRCA2 Variants

HBOC — reclassification of BRCA1/BRCA2 splicing variants
7
Variant interpretationACMG classificationVUS reclassified
Clinical Chemistry, 2026· FebRead
Language model / AI
PubMed

Genetic Diagnosis and Discovery Enabled by Large Language Models

Rare diseases — LLM use for genetic diagnosis and new gene discovery
7
Language model / AILLM applied
2026· AprRead
Long-read
PubMed

NanoTS: a deep learning tool for accurate SNP calling in nanopore long-read transcriptome data.

SNP calling from nanopore transcriptome sequencing data
6
Long-readNew toolLong-read sequencing
Nat Methods 2026· SepRead
KCNH2
PubMed

Likelihood ratio calibration aligns MAVE and automated patch-clamp functional evidence for KCNH2 variants in long QT syndrome.

Long QT syndrome — functional evidence for the interpretation of KCNH2 variants
6
Variant interpretation
Heart Rhythm 2026· SepRead
STXBP1
PubMed

Gene-specific machine learning model EpiPred identifies likely pathogenic variants in the epilepsy-related gene STXBP1.

STXBP1-related developmental and epileptic encephalopathies
6
Pathogenicity predictionPathogenicity predictionNew tool
J Clin Invest 2026· SepRead
Long-read
PubMed

Parallel Analysis of Repeat Expansions: An Updated Clinical Nanopore Cas9-Targeted Sequencing Workflow for Nanopore R10 Flow Cells.

Repeat expansions — hereditary ataxias and neuromuscular disorders
6
Long-readLong-read sequencingClinical pipeline
J Mol Diagn 2026· SepRead
Language model / AI
PubMed

Genomic language model for predicting enhancers and their allele-specific activity in the human genome.

Enhancer annotation and non-coding variants
6
Language model / AINew toolLLM applied
Bioinformatics 2026· SepRead
Structural variants
PubMed

COSIGT: population-scalable genotyping of complex loci from low-coverage sequencing data using pangenome graphs.

Complex locus genotyping
6
Structural variantsNew toolBenchmark
Genome Biol 2026· SepRead
Pathogenicity prediction
PubMed

CanVar-UK: A collaborative platform for germline interpretation in cancer susceptibility genes.

Hereditary cancer predisposition — variant interpretation
6
Pathogenicity predictionNew toolClinical pipeline
Am J Hum Genet 2026· SepRead
Long-read
PubMed

ECHO: a nanopore sequencing-based workflow for (epi)genetic profiling of the human repeatome

Human repeatome analysis
6
Long-readNew toolLong-read sequencing
Bioinformatics 2026· SepRead
Long-read
PubMed

Coverage-aware evaluation of Oxford nanopore methylation callers using whole-genome data

DNA methylation calling from nanopore sequencing
6
Long-readBenchmarkLong-read sequencing
Sci Justice 2026· JulRead
Long-read
PubMed

Analysing long-read CRISPR experiments with CRISPRLungo.

Analysis of genome editing experiments
6
Long-readNew toolLong-read sequencing
Nat Biomed Eng 2026· AugRead
Structural variants
PubMed

Optical genome mapping enhanced by refined variant interpretation in pediatric acute lymphoblastic leukemia.

Paediatric B-cell acute lymphoblastic leukaemia
6
Structural variantsClinical pipelineSV caller
J Pathol 2026· AugRead
Long-read
PubMed

Detecting pathogenic structural variation in families with undiagnosed rare disease in a national genome project.

Rare disease unsolved after short-read sequencing
6
Long-readLong-read sequencingSV caller
Eur J Hum Genet 2026· AugRead
Noncoding variant interpretation
PubMed

Mapping enhancer-gene regulatory interactions from single-cell data.

Noncoding variant interpretation
6
New toolBenchmark
Nat Genet 2026· AugRead
Inborn genetic diseases amenable to exon skipping
medRxiv

A scalable platform for exon-skipping antisense oligonucleotide therapy development for inborn genetic diseases

Inborn genetic diseases amenable to exon skipping
6
New tool
medRxiv 2026· JulRead
Pathogenicity prediction
PubMed

Enhancing missense variant classification in predicted intrinsically disordered regions.

Missense variant classification in intrinsically disordered regions
6
Pathogenicity predictionNew toolPathogenicity prediction
PLoS One 2026· JulRead
Long-read
PubMed

Benchmarking long-read variant sensitivity across ONT and PacBio platforms using known clinically reported variants in a cohort of critically ill newborns.

Genomic diagnosis in neonatal intensive care
6
Long-readBenchmarkLong-read sequencing
medRxiv 2026· JulRead
Structural variants
PubMed

Beyond the linear genome: how reference bias threatens preventive medicine and geroscience.

Reference bias in preventive genome sequencing
6
Structural variantsClinical pipeline
Geroscience 2026· JulRead
Triage for rapid genome sequencing in neonatal intensive care
medRxiv

NeoGx: Machine-Recommended Rapid Genome Sequencing for Neonates

Triage for rapid genome sequencing in neonatal intensive care
6
New toolClinical pipeline
medRxiv 2026· JulRead
Long-read
PubMed

Accuracy of nanopore sequencing technology for rapid diagnosis of tuberculous mediastinal and hilar lymphadenopathy.

Mediastinal tuberculosis — Nanopore sequencing diagnosis
6
Long-readLong-read sequencingClinical pipeline
BMJ Open 2026· MayRead
GPIHBP1
PubMed

Resolving a complex GPIHBP1 exons 3-4 deletion adjacent to low-complexity repeats using adaptive sampling long-read sequencing in familial chylomicronaemia.

Familial chylomicronaemia syndrome (GPIHBP1)
6
Long-readSV callerClinical pipeline
Clinica Chimica Acta 2026· MayRead
ADAMTS13
PubMed

An Interactive Database of ADAMTS13 Variants Yields Novel Insight into Thrombotic Thrombocytopenic Purpura.

Congenital thrombotic thrombocytopenic purpura — ADAMTS13 variant database
5
Variant interpretationNew tool
Blood Adv 2026· SepRead
Language model / AI
PubMed

Genolator enables protein function interpretation using a multimodal large language model fusing genomic and structural interpretation with natural language interaction.

Protein function interpretation
5
Language model / AILLM appliedNew tool
Genome Biol 2026· SepRead
GLP1R
PubMed

The GPCRVP score reliably predicts the impact of GLP1R human variants on receptor function.

Type 2 diabetes and obesity — GLP-1 receptor variants
5
Pathogenicity predictionPathogenicity predictionNew tool
Diabetologia 2026· SepRead
KMT2B
PubMed

Nanopore long-read sequencing facilitates accurate diagnosis of KMT2B-related dystonia.

KMT2B-related dystonia
5
Long-readLong-read sequencingClinical pipeline
Clin Epigenetics 2026· SepRead
Disease-associated variants in phase-separating proteins
PubMed

DisPhaseDB 2.0: Improved interpretation of disease-associated variants in liquid-liquid phase separation proteins with agent-accessible querying.

Disease-associated variants in phase-separating proteins
5
New toolLLM applied
Protein Sci 2026· SepRead
Clinical pipeline
PubMed

TargetQC: A targeted quality control framework for clinical genomic testing.

Quality control of clinical sequencing
5
Clinical pipelineNew toolBenchmark
iScience 2026· AugRead
Structural variants
PubMed

Optical genome mapping improves structural variant detection and characterization in syndromic and neurogenetic disorders.

Neurogenetic and syndromic disorders — structural variants
5
Structural variantsClinical pipeline
Hum Genet 2026· SepRead
Long-read
medRxiv

Cell-type-resolved somatic variant discovery from bulk long-read sequencing

Tissue somatic mosaicism
5
Long-readNew toolLong-read sequencing
medRxiv 2026· SepRead
SCN1A
PubMed

From targeted SCN1A analysis to whole exome sequencing: clinical utility and novel genetic findings in a Hungarian paediatric epilepsy cohort.

Paediatric-onset epilepsy
5
Clinical pipelineClinical pipeline
Hum Genet 2026· AugRead
Promoter prediction at single-nucleotide resolution
Journal

EvoSNR-Prom: Predicting promoters at single-nucleotide resolution with label-aware transfer learning of the pretrained EVO model

Promoter prediction at single-nucleotide resolution
5
New toolLLM applied
PLOS Comput Bio 2026· AugRead
Identification of rare cell populations in single-cell transcriptomics
Journal

RareCapsNet: An explainable capsule network enables robust discovery of rare cell populations from large-scale single-cell transcriptomics

Identification of rare cell populations in single-cell transcriptomics
5
New toolBenchmark
PLOS Comput Bio 2026· AugRead
Long-read
PubMed

Simultaneous detection of thalassemia, hemoglobinopathies, and G6PD variants using long-read nanopore sequencing: genetic complexity and heterogeneity in Thailand.

Thalassemias, hemoglobinopathies and G6PD deficiency
5
Long-readLong-read sequencingClinical pipeline
PeerJ 2026· AugRead
Clinical pipeline
PubMed

Whole genome sequencing in cerebral palsy: a UK paediatric pilot study.

Cerebral palsy in children
5
Clinical pipelineClinical pipeline
Lancet Reg Health Eur 2026· AugRead
Pathogenicity prediction
PubMed

DisoPatho: A Cross-View Feature-Adaptive Interaction Encoding Framework for Predicting Disease-Associated Variants in Intrinsically Disordered Regions.

Disease-associated variants in intrinsically disordered regions
5
Pathogenicity predictionNew toolPathogenicity prediction
J Chem Inf Model 2026· JulRead
Long-read
medRxiv

SVkhor: a unified framework for structural variant integration across long-read, short-read, and optical genome mapping data

Structural variant genomic diagnosis
5
Long-readNew toolSV caller
medRxiv 2026· AugRead
Spatial tissue profiling
PubMed

Sequencing-free spatial profiling of post-transcriptional regulation in fresh tissues using nanoneedle arrays.

Spatial tissue profiling
5
New tool
Nat Biomed Eng 2026· JulRead
Variant interpretation
PubMed

Comparative evaluation of manual and automated ACMG/AMP variant classification: implications for clinical genetic practice.

Automated ACMG/AMP tools vs expert curation
5
Variant interpretationBenchmarkPathogenicity prediction
Sci Rep 2026· JulRead
Standards and resources for the medical genome
PubMed

Harmonizing standards and resources for the medical genome.

Standards and resources for the medical genome
5
Nature 2026· JulRead
Variant interpretation
PubMed

Classifying Clinical Evidence Levels of Cancer Variants in Biomedical Literature Using Machine Learning.

Automated oncogenic variant interpretation
5
Variant interpretationLLM appliedBenchmark
Stud Health Technol Inform 2026· MayRead
Pathogenicity prediction
medRxiv

AlphaGenome Atlas: in silico mutagenesis of the entire human genome improves prioritization and interpretation of non-coding variants

Non-coding variants — prioritization and interpretation
4
Pathogenicity predictionNew toolPathogenicity prediction
medRxiv 2026· SepRead
Variant interpretation
PubMed

Splice-site variants in neurology: from molecular mechanisms to clinical interpretation - a focused review.

Splice-altering variants in neurogenetics — mechanisms and clinical interpretation
4
Variant interpretation
Neurogenetics 2026· SepRead
Long-read
PubMed

SVPG: a pangenome-based structural variant detection approach and rapid augmentation of pangenome graphs with new samples.

Structural variant detection from long-read data using a pangenome reference
4
Long-readSV callerLong-read sequencing
Nat Methods 2026· SepRead
Variant interpretation
PubMed

Interpreting human genetic variation at atomic resolution.

Interpreting genetic variants at atomic resolution — computational structural genomics
4
Variant interpretation
Nat Genet 2026· SepRead
Pathogenicity prediction
PubMed

A machine learning framework for predictive interpretation of variants of uncertain significance in hereditary cancer.

Hereditary cancer
4
Pathogenicity predictionPathogenicity prediction
Front Syst Biol 2026· AugRead
Language model / AI
bioRxiv

SIEVE: Sparse Interpretable Exome Variant Explainer.

Variant prioritisation in exome case-control studies
4
Language model / AINew tool
bioRxiv 2026· AugRead
Non-coding germline risk of lung cancer
bioRxiv

PGViS: Personal Genome Variant interpretation Score for lung cancer genomes.

Non-coding germline risk of lung cancer
4
New toolLLM applied
bioRxiv 2026· AugRead